DEVELOPMENT OF THE INTERNATIONAL IMMUNOGENETICS HLA DATABASE.
J. Robinson1, J. G. Bodmer1, A. Malik2
and S. G .E. Marsh3. 1Imperial Cancer
Research Fund Cancer and Immunogenetics Laboratory, Institute of
Molecular Medicine, John Radcliffe Hospital, Oxford, UK, 2European
Bioinformatics Institute, Cambridge, UK . 3Anthony
Nolan Research Institute, London, UK.
The HLA Database is the second of the International Immunogenetics
Databases, an integrated database specialising in sequences of the human
histocompatability system. The database structure is based on established
sequence databases and other small specialised databases, designed to contain
highly annotated and validated sequences. Development of the database has
been undertaken in collaboration with the European Bioinformatics Institute,
to ensure close links with the EMBL nucleotide sequence database. The first
release of the database will be available in autumn 1998. The current database
is maintained at the Anthony Nolan Research Institute in London, which
provides limited access to the database in the form of preformatted sequence
alignments. The new release will provide a more detailed and fully interactive
sequence database for users. The HLA Database expands on the existing facilities
and provides better 'On-line' access via the World Wide Web. Tools include
advances sequence queries, protein translations, phylogenetic analysis,
sequence alignments and extensive links to other databases. The database
also provides on-line submission tools for new sequences to the WHO HLA
Nomenclature Committee for naming and inclusion into the database. The
use of on-line interfaces will mean a larger number of users can access
the many tools providing a more extensive source of sequence information
on the human histocompatability complex. Future developments include more
advanced query tools, development of a parallel database for non human
primate sequences, and the strengthening of links with other sequence databases
to provide users with a single and up to date sequence database, officially
recognized by the WHO HLA Nomenclature Committee.